The tasks that the command center normally oversees... aren't as intense as those of the Judgement Institute. In managing related seals and handling Transcendent events, they play more of a "brain trust" role, remaining behind the scenes and responsible for overall coordination.
Just like Wei Shu in mission A-009 that went out of control.
Gu Shen was well aware that not everyone had an absolutely calm and wise "commander" living in their minds like he did, so in the complex Transcendent event missions, the role of the commander was very important.
